"bosTau6": Cow (Bos taurus) Nov 2009, UMD_3.1,
Existing genomes with content updates:
"bosTau4, bosTauMd3, canFam2, mm9, panTro3, rn4"
Native genomes are sometimes referred to as "locally
cached" on tool forms.
New and updated indexes include: NGS:+ (all tools), Lift-Over
(Convert genome coordinates), and Fetch Sequences
Currently, these additions and updates exclude the tools in
the group NGS: GATK Tools (beta), however new genomes
will be added soon. For now, use the custom
reference genome option with this tool group, if not using
"Homo sapiens b37 (hg_g1k_v37)".
Genome requests can be sent to the [hidden email]mailing list. Please include the full genome name, a link to
the stable public source, and any build or species specific
information you feel is relevant. This helps us to create a
reference genome the entire Galaxy community can use.
Unfinished genomes or genomes not yet published to a stable
source repository are still often best used as a custom
reference genome with tools, but please feel free to check
in for feedback.