[galaxy-announce] Galaxy July 20, 2012 Distribution & News Brief

classic Classic list List threaded Threaded
1 message Options
| Threaded
Open this post in threaded view

[galaxy-announce] Galaxy July 20, 2012 Distribution & News Brief

Jennifer Jackson

Galaxy July 20, 2012 Distribution & News Brief

Complete News Brief

  • Freebayes has moved from the Galaxy distribution to the Galaxy's Main Tool Shed

  • EMBOSS version 5.0.0 tool dependencies in the emboss_5 repository of the Galaxy Main Tool Shed updated to include information for automatically installing.

  • Tool Shed now also supports specifying the third party tool dependencies to be automatically installed in new repositories

  • Admin Genome Indexing is now in BETA. Download, index, and track progress right from the admin UI!

  • Improved Error Handling that captures EXIT codes, STDOUT, and STDERR from tools in XML. Be sure to read full details.

  • TopHat2/Bowtie2 latest support includes option to 'report discordant pairs', updated tests, and more preset options.

  • Trackster new parameter space visualization. Includes BRAND NEW Features!! More details coming soon, but give a test drive now.


new:     % hg clone http://www.bx.psu.edu/hg/galaxy galaxy-dist
upgrade: % hg pull -u -r ec29ce8e27a1

Thanks for using Galaxy!
We hope to see everyone in Chicago @ GCC2012!!

The Galaxy Team

galaxy-announce mailing list
[hidden email]
To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

Jennifer Hillman-Jackson
Galaxy Support and Training